Testing

Running Tests

All tests must run inside containers:

# Unit tests (default: excludes integration markers)
docker compose -f docker-compose.yml -f docker-compose.dev.yml run --rm app \
  python -m pytest

# Integration tests
docker compose -f docker-compose.yml -f docker-compose.dev.yml run --rm app \
  python -m pytest -m integration

# Specific marker
docker compose -f docker-compose.yml -f docker-compose.dev.yml run --rm app \
  python -m pytest -m db

# Verbose output for a specific file
docker compose -f docker-compose.yml -f docker-compose.dev.yml run --rm app \
  python -m pytest tests/unit/test_fingerprints.py -v

Test Configuration

From pyproject.toml:

[tool.pytest.ini_options]
addopts = "-q -m \"not integration\" --import-mode=importlib"
asyncio_mode = "auto"
testpaths = ["tests"]

• Default run excludes integration marked tests
• Uses importlib import mode to resolve module name collisions
• Async tests run automatically (no @pytest.mark.asyncio needed)

Markers

Marker	Description
integration	Tests requiring external services (database, network)
db	Tests that validate database behavior and constraints
migrations	Tests focused on Alembic schema migration correctness
schema	Tests focused on multi-tenant schema invariants
smoke	Smoke tests for containerized runtime

Test Tiers

Unit Tests (tests/unit/)

Fast, no-database tests. Mock external dependencies. These run by default.

Examples:

• test_fingerprints.py - Publication fingerprinting logic
• test_scholar_parser.py - HTML parsing without network calls
• test_doi_normalize.py - DOI normalization rules
• test_ingestion_arxiv_rate_limit.py - Rate limiter behavior
• test_publication_pdf_resolution_pipeline.py - PDF pipeline logic

Domain-specific unit tests are organized under tests/unit/services/domains/:

• arxiv/ - Cache, client, gateway, guards, parser, rate limit tests
• openalex/ - Client and matching tests
• publications/ - Dedup tests

Integration Tests (tests/integration/)

Require a running database. Test full request/response flows and data consistency.

Examples:

• test_api_v1.py - API endpoint integration tests
• test_db_integrity.py - Database integrity checks
• test_run_lifecycle_consistency.py - Run state machine transitions
• test_deferred_enrichment.py - Enrichment pipeline with real data
• test_fixture_probe_runs.py - Fixture-based run probes

Smoke Tests

Marked with @pytest.mark.smoke. Validate the containerized runtime starts and serves basic requests.

Fixtures

Test fixtures live in tests/fixtures/:

tests/fixtures/
└── scholar/
    ├── profile_ok_amIMrIEAAAAJ.html          # Successful profile HTML
    └── regression/
        ├── profile_P1RwlvoAAAAJ.html         # Regression case
        ├── profile_LZ5D_p4AAAAJ.html         # Regression case
        └── profile_AAAAAAAAAAAA.html         # Regression case

Scholar HTML fixtures are real Google Scholar profile pages used to test parser robustness against DOM structure changes.